Interaction mechanism between oligopeptides from yellow pond turtle and cyclooxygenase-2 based on fluorescence spectroscopy and molecular docking
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College of Food Science and Technology, Huazhong Agricultural University/ Key Laboratory of Environment Correlative Dietology,Ministry of Education, Wuhan 430070, China

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TS201.2

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    Abstract:

    This study aimed to reveal the mechanism of action of oligopeptides KNGP on cyclooxygenase-2 (COX-2), and to explore the interaction between KNGP from yellow pond turtle peptides (YPTP) and COX-2.The IC50 values of YPTP, synthesized KNGP and RG were determined by UV spectrophotometry.The mechanism of interaction between KNGP and COX-2 was investigated by intrinsic fluorescence, synchronous fluorescence, three-dimensional fluorescence spectroscopic techniques and ANS fluorescence probe.The mode of action between KNGP and COX-2 was studied by molecular docking.The results showed that the IC50 values of YPTP, KNGP and RG were 0.609, 0.046 and 0.056 mg/mL, respectively.The IC50 of KNGP was lower than that of the positive drug ibuprofen (IC50=0.217 mg/mL), indicating that KNGP had a significant inhibitory effect on COX-2 enzyme.The intrinsic fluorescence results showed that KNGP had a static quenching effect on COX-2, and the action site was single.Meanwhile, the results of thermodynamic parameter calculations showed that hydrophobic interaction is the main driving force in the process of KNGP binding to COX-2, and KNGP binding to COX-2 is a spontaneous process driven by entropy.The results of synchronous fluorescence, three-dimensional fluorescence spectroscopic and ANS fluorescence probe showed that the hydrophobic environment of tyrosine and tryptophan in COX-2 changed, and the hydrophobicity of COX-2 surface was weakened.The molecular docking between KNGP and COX-2 showed that KNGP molecules formed hydrogen bonds and hydrophobic interactions with the amino acid residues of COX-2 active center mainly through NH, C=O structure, indole and imidazole structure, and enhanced the binding stability by forming electrostatic interaction.Therefore, the results showed that KNGP could form a complex with COX-2 at a single site through hydrogen bonding and hydrophobic interaction, and change the secondary structure of the enzyme to inhibit its activity.

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闫佳兴,张久亮. Interaction mechanism between oligopeptides from yellow pond turtle and cyclooxygenase-2 based on fluorescence spectroscopy and molecular docking[J]. Jorunal of Huazhong Agricultural University,2022,41(5):169-178.

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History
  • Received:May 08,2022
  • Revised:
  • Adopted:
  • Online: October 11,2022
  • Published: