水稻LEA_2家族的鉴定与表达谱分析
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广西自然科学基金项目(2018GXNSFAA281116); 国家重点研发计划项目(2018YFD0301303); 国家自然科学基金项目(31771775; 31171524)


Characterization and expression profile analysis of LEA_2 family in rice
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    摘要:

    为探索水稻LEA_2家族成员的特点,通过生物信息学分析从水稻基因组中鉴定出60个LEA_2家族成员,它们不均匀分布于12条染色体。蛋白序列分析结果显示,LEA_2家族蛋白的分子质量为16.24~49.14 ku,等电点4.7~11.7,有42个蛋白倾向于疏水;系统进化树分析显示,LEA_2家族可以分成5个组,同一组的蛋白成员包含的保守基序类型基本相同;基因结构分析表明LEA_2基因包含少量的内含子或者不含内含子;启动子分析表明水稻LEA_2基因启动子包含大量与逆境胁迫响应、激素信号传导及生长发育有关的作用元件。根据表达谱分层聚类分析及荧光定量PCR实验发现水稻LEA_2家族基因间共表达现象明显,同时发现OsLEA2-2和OsLEA2-26基因均受干旱胁迫上调表达60倍以上。

    Abstract:

    In order to explore the characteristics of LEA_2 family members in rice,we characterized 60 LEA_2 family members in the whole genome of rice with bioinformatics,and found they were unevenly distributed on 12 chromosomes. Results of analyzing protein sequence showed that the molecular weight of the LEA_2 proteins were between 16.24 ku and 49.14 ku with isoelectric points ranging from 4.7 to 11.7,and 42 of them tended to be hydrophobic. Results of phylogenetic analysis indicated that rice LEA_2 proteins are classified into five major clades,and proteins in the same clade has similar conservative motifs. Results of analyzing gene structure showed that LEA_2 genes had no or few introns. Results of analyzing promoter sequence showed that there were a large number of cis-elements related to growth and development,hormone signal transduction and stress response in promoter regions of rice LEA_2 genes. Based on the hierarchical cluster analysis of the expression profile and fluorescence quantitative PCR assays, the co-expression of LEA_2 family genes was found to be obvious. Both OsLEA2-2 and OsLEA2-26 were up-regulated and expressed by more than 60 times under drought stress.

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薛亚莉,魏晓双,周海连,李朝阳,胡利华,王令强,张翠翠.水稻LEA_2家族的鉴定与表达谱分析[J].华中农业大学学报,2021,40(2):93-102

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  • 收稿日期:2020-11-09
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  • 在线发布日期: 2021-04-16
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