猪抗酶1基因核心启动子区鉴定及单倍型转录活性比较
DOI:
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

基金项目:

国家自然科学基金项目(31201771); 现代农业产业技术体系专项(CARS-36)


Identification of core promoter of porcine AZ1 gene and transcriptional activity of haplotypes 
Author:
Affiliation:

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    通过双荧光素酶报告基因载体系统检测猪抗酶1(AZ1)基因启动子转录活性,分析蓝塘和长白猪群体AZ1基因启动子SNP及单倍型,在此基础上比较不同单倍型转录活性。结果表明: -453/+79为核心启动子区;在2个群体中检测到AZ1基因启动子8个SNPs,分别为-713 T>C、-584 A>C、-476 G>A、-365 T>C、-348 C>T、-294 G>C、-288 T>G和 -234 T>C,蓝塘猪群体具有更丰富的单核苷酸多态性,而长白猪群体仅在-288座位存在GG和GT 2种基因型,其他7个SNPs均为纯合状态;蓝塘猪群体LTH1单倍型(TAGCCGTC,-713/-234)频率为0.526,为蓝塘猪优势单倍型,其次为LTH2(TAGCCGTT),频率为0.166;长白猪群体优势单倍型为Landrace-H(TAGTCGGT),频率为0.939。LTH1转录活性高于LTH2和Landrace-H,推测-234 T>C、-365 T>C和-288 T>G座位是造成不同单倍型转录活性差异的原因。

    Abstract:

    In the study,the core region of porcine AZ1 gene promoter was identified through the Dual-luciferase Reporter Assay System.SNPs and haplotypes were analyzed in Lantang and Landrace pig populations,and the transcriptional activities of different haplotypes were measured.The results showed that the region of ??453 /+79 nt was the core region of the promoter.Eight SNPs were found in the two populations,and they were ??713 T>C,??584 A>C,??476 G>A,??365 T>C,??348 C>T,??294 G>C,??288 T>G,and ??234 T>C.Richer SNPs were found in the Lantang pigs.In the Landrace population,GG and GT genotypes were found at ??288 locus,and no heterzygotes were detected in the other seven loci.The frequencies of predominant haplotypes of LTH1 (TAGCCGTC) and LTH2 are 0.526 and 0.166 respectively in Lantang population,and the Landrace-H haplotype (TAGTCGGT) was predominant in the Landrace population.The activity of LTH1 was stronger than that of LTH2 and Landrace-H.The SNPs of ??234 T>C,??365 T>C and ??288 T>G might be the causative mutations that change the different activities of the haplotypes.

    参考文献
    相似文献
    引证文献
引用本文

张爱玲,孙显月,张哲,李加琪,张豪.猪抗酶1基因核心启动子区鉴定及单倍型转录活性比较[J].华中农业大学学报,2016,35(3):94-100

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2015-08-30
  • 最后修改日期:
  • 录用日期:
  • 在线发布日期: 2016-04-29
  • 出版日期: