尖孢镰刀菌甜瓜专化型基因组规模分泌蛋白的预测与分析
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国家自然科学基金项目(30971887); 广东省普通高校青年创新人才项目(粤教科函[2015]3号) 


Genome-scale prediction and analysis of secreted proteins of Fusarium oxysporum f. sp. melonis
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    摘要:

    利用SignalP、WoLF PSORT、TMHMM、big-PI Predictor、TargetP和SecretomeP等软件,对尖孢镰刀菌甜瓜专化型(Fusarium oxysporum f. sp. melonis,FOM)全基因组26 811条蛋白质氨基酸序列进行了分泌蛋白的预测分析。结果表明,FOM全基因组编码蛋白中有1 145个经典分泌蛋白,占编码蛋白总数的4.3%;有8 471个非经典分泌蛋白,占编码蛋白总数的31.6%。对经典分泌蛋白特征进行分析,发现其氨基酸长度集中在100~600个氨基酸,信号肽长度集中在17~22个氨基酸。对经典分泌蛋白的功能预测分析表明,有605个分泌蛋白获得了注释,主要涉及糖代谢、转运过程、过氧化氢代谢和生物合成等。对碳水化合物酶类(CAZymes)进行分析,结果表明有277个分泌蛋白为CAZymes,占经典分泌蛋白总数的24.2%。

    Abstract:

    Genome-scale prediction of FOM(Fusarium oxysporum f.sp.melonis) secretome was firstly performed by combining different bioinformatic softwares,including SignalP,TMHMM,WOLFPRT,TargetP,big-PI Fungal Predictor,and SecretomeP in this study.Of the 26 811 FOM protein sequences,1 145 sequences (4.3%) were predicted to be classically secreted proteins and 8 471 sequences (31.6%) might be secreted in a non-classical manner.The 1 145 secreted proteins were characterized with 100 to 600 amino acids,and the length of the signal peptides was concentrated between 17 to 22 amino acids.Of the 1 145 classically secreted proteins,a total of 605 proteins were functionally annotated to be involved in carbohydrate metabolic process,transport process,hydrogen peroxide catabolic process and biosynthetic process.Among the 1 145 classically secreted proteins,277 proteins (24.2%) were predicted to be CAZymes.

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聂燕芳,周 淦,黄嘉瑶,王振中,李云锋.尖孢镰刀菌甜瓜专化型基因组规模分泌蛋白的预测与分析[J].华中农业大学学报,2016,35(3):24-29

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  • 收稿日期:2015-09-20
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  • 在线发布日期: 2016-04-29
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