1株降解PCBs细菌的鉴定及其bphA1序列分析
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国家林业局“948”项目(2008-4-35)


Identification of a polychlorinated biphenyls-degrading rhizobacterium and its bphA1 sequence analysis
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    摘要:

    通过富集培养方法从受多氯联苯(polychlorinated biphenyls,PCBs)污染的苜蓿根际土壤富集分离到1株PCBs降解细菌并命名为A1。根据形态特征和16S rDNA序列分析,鉴定该菌株为纽伦堡潘多拉菌Pandoraea norimbergensis。采用休眠细胞体系测定该菌株对Aroclor1242的降解能力,经GC-MS色谱分析,该菌株在72 h内对Aroclor1242的总降解率为56.7%。通过对其bphA1基因的克隆和序列分析,结果表明:P.norimbergensis的bphA1基因与Pandoraea sp.JB1的bphA1基因序列同源性为100%; 核酸序列转化成氨基酸序列后,该菌的bphA1蛋白结构预测模型与Comamonas testosteroni B-356具有99.37%的相似性。

    Abstract:

    A new PCB-degrading rhizobacterium strain named A1 was isolated from the long-term PCBs-contaminated alfalfa rhizospheric soil by enrichment culture. Through morphological observation and sequence analysis of 16S rDNA, the strain was identified as Pandoraea norimbergensis. GC-MS was used to determine the ability of resting cells degradation of PCBs, and it was found that the strain could totally remove 56.7% of the Aroclor1242 in 72 hours. The bphA1 gene core,encoding the catalytic site of the large subunit of biphenyl dioxygenase,was sequenced and its third structure was also predicted. It showed that the nucleic acid sequence of bphA1 gene had 100% homology compared with Pandoraea sp.JB1,and the third structure of protein had 99.37% identity compared with Comamonas testosteroni B356.

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王义勋,蔡三山,张娟,李晶,侯明生,陈京元.1株降解PCBs细菌的鉴定及其bphA1序列分析[J].华中农业大学学报,2013,32(3):47-51

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  • 收稿日期:2012-11-04
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