草鱼GSTR基因外显子1、外显子2的SNPs筛选及其与生长性状的关联分析
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现代农业产业技术体系建设专项(Nycytx-49-07)


SNPs in exon 1,exon 2 of GSTR gene and its relationship with growth traits in grass carp
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    摘要:

    根据草鱼EST数据库中的rho型谷胱甘肽硫转移酶基因cDNA序列设计引物,扩增预计存在的SNP位点。采用PCR产物测序法和PCR-RFLP法,在珠江水系草鱼养殖群体中筛选到2个SNP位点,分别位于外显子1和外显子2上,为C-T突变,且属于同义突变,统计了多态位点在群体中的分布:C+129T位点CC型占0.69%,TC型占8.75%,TT型占80.56%;C+192T位点CC型占25.4%,TC型占48.6%,TT型占26.1%。利用一般线性模型将SNPs与草鱼6个生长性状进行关联分析,结果表明,C+129T位点TT型个体6个生长性状均值比TC型高(P>0.05);C+192T位点TT型个体体质量均值高于TC型和CC型个体(P<0.05)。双倍型关联分析表明D1型个体的体质量均值明显高于D3型和D6型(P<0.05),因而可以考虑将GSTR基因作为影响草鱼体质量等生长性状的候选基因,应用于草鱼分子辅助育种。

    Abstract:

    Primers were designed according to glutathione S-transferase-rho gene from EST database of grass carp.The PCR products were sequenced for detecting polymorphisms in cultured population and two SNPs sites were found:C+129T in exon 1 and C+192T in exon 2.Both SNPs are synonymous mutation.The polymorphisms were genotyped by PCR-RFLP methods.The percentage of CC,TC and TT genotype in C+129T site was 0.69%,18.75% and 80.56%,respectively.The percentage of CC,TC,and TT genotype in C+192T site was 25.4%,48.6% and 26.1%,respectively.A general linear model was used to analyze relationship between GSTR gene polymorphisms and 6 major growth traits.The results indicated that the average value of growth character TT genotype was higher than that of TC genotype in C+129T site,although no significant difference was observed.The average body weight of TT genotype was higher than that of TC and CC genotype in C+192T site (P<0.05).Six diplotypes were constructed based on two SNPs in the experiment population and the average body weight of diplotype D1 was higher than that of D3 diplotypes and D6 diplotypes(P<0.05).GSTR gene could be recommended as a candidate gene for characterizing grass carp growth traits which could be useful for molecular breeding.

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刘小献,白俊杰,徐 磊,于凌云,樊佳佳,韩林强.草鱼GSTR基因外显子1、外显子2的SNPs筛选及其与生长性状的关联分析[J].华中农业大学学报,2011,30(6):753-758

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  • 收稿日期:2011-03-29
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