基于形态性状和SSR标记的克氏原螯虾养殖群体遗传多样性分析
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作者单位:

1.华中农业大学水产学院/农业农村部淡水生物繁育重点实验室,武汉 430070;2.广西壮族自治区水产科学研究院/广西水产遗传育种与健康养殖重点实验室,南宁 530021

作者简介:

胡倩, E-mail:HQ0828@webmail.hzau.edu.cn

通讯作者:

彭敏,E-mail:837969487@qq.com

中图分类号:

S917.4

基金项目:

广西科技计划项目(桂科AB21076020)


Genetic diversity analysis of farming Procambarus clarkii population based on morphology traits and SSR markers
Author:
Affiliation:

1.College of Fisheries/Key Lab of Freshwater Animal Breeding, Ministry of Agriculture and Rural Affair, Huazhong Agricultural University, Wuhan 430070, China;2.Guangxi Academy of Fishery Sciences/Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture, Nanning 530021, China

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    摘要:

    为客观评估广西南宁周边地区克氏原螯虾养殖群体的遗传多样性,采集来自南宁的3个克氏原螯虾群体——埃及群体(AJ)、良庆群体(LQ)和上林群体(SL),以及湖北荆州(JZ)和江西湖口(HK)的群体各1个,采用形态学结合微卫星分子标记的方法分析其遗传多样性水平。形态分析结果显示,雌性群体的综合判别准确率为68.59%,雄性群体的综合判别准确率为73.60%;3个南宁群体(AJ,LQ,SL)与JZ群体聚为一类,3个南宁群体间具有较高的形态相似度。微卫星分析结果显示,AJ群体和LQ群体的遗传多样性最高,SL群体和HK群体次之;LQ群体与SL群体的遗传分化系数和遗传距离最小。结果表明广西南宁克氏原螯虾群体具有较高的遗传多样性,从国外引种或国内不同地理来源群体的杂交可能是提高克氏原螯虾群体遗传多样性的重要途径。

    Abstract:

    To objectively assess the genetic diversity of Procambarus clarkii cultured populations in the vicinity of Nanning, Guangxi, three populations of P. clarkii from Nanning (AJ, LQ and SL), and one population each from Jingzhou, Hubei (JZ) and Hukou, Jiangxi (HK) were collected. The level of genetic diversity was investigated using morphology and microsatellite markers. Morphological analysis showed that the total discrimination accuracy of female and male populations was 68.59% and 73.60%, respectively. Morphological clustering grouped the three Nanning populations into the same branch as the JZ population, indicating that the three Nanning populations had high morphological similarity. Microsatellite analysis revealed that the AJ population and LQ population had the highest genetic diversity, followed by the SL population and HK population. The genetic differentiation coefficient and genetic distance between the LQ population and SL population were the smallest. The results indicated that the populations of P. clarkii in Nanning, Guangxi had high genetic diversity, and that the introduction of P. clarkii from abroad or hybridization between different geographical populations may be an important way to enhance the genetic diversity of P. clarkii.

    表 6 5个克氏原螯虾群体基于微卫星的遗传多样性Table 6 The genetic diversity of five P. clarkii populations based on microsatellite data
    表 4 5个克氏原螯虾群体根据形态的判别分析结果Table 4 Discriminant analysis results of five populations of P. clarkii based on morphology
    表 5 12个微卫星位点在5个克氏原螯虾群体上的特征Table 5 Characterization of 12 microsatellite loci in five P. clarkii populations
    表 3 克氏原螯虾雌雄群体的标准化形态参数统计量及最大差异系数Table 3 Statistics of standardized morphological parameters and maximum coefficient of variation in the female and male population of P. clarkii
    图1 克氏原螯虾形态性状测量Fig.1 Morphological characteristics measurementfor P. clarkii
    图2 5个克氏原螯虾群体雌性(A和C)和雄性(B和D)的判别散点图和聚类图Fig.2 Discriminant scatter plots and cluster plots of five populations of female (A and C) and male (B and D) P. clarkii
    图3 基于Nei’s遗传距离的5个克氏原螯虾群体的UPGMA聚类树Fig.3 UPGMA clustering tree of five P. clarkii populations based on Nei’s genetic distance
    表 7 5个克氏原螯虾群体间的遗传距离(DA,对角线上)和固定指数(Fst,对角线下)Table 7 Genetic distance (DA, above diagonal) and fixation index (Fst, below diagonal) among five populations of P. clarkii
    表 2 克氏原螯虾微卫星位点引物序列及退火温度Table 2 Microsatellite primer sequences and the annealing temperature of P. clarkii
    表 1 采样地点的地理坐标和每个群体的样本数量Table 1 Geographical coordinates of sampling sites and number of specimens per population
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胡倩,王齐帅,黄瑾,朱威霖,陈晓汉,陈秀荔,李艳和,彭敏.基于形态性状和SSR标记的克氏原螯虾养殖群体遗传多样性分析[J].华中农业大学学报,2024,43(3):258-266

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  • 收稿日期:2023-05-20
  • 在线发布日期: 2024-06-06
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