克氏原螯虾Rho基因家族的全基因组鉴定及表达分析
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1华中农业大学水产学院/双水双绿研究院/长江经济带大宗水生生物产业绿色发展教育部工程研究中心, 武汉 430070;2湖北洪山实验室,武汉 430070

作者简介:

杨成伟,E-mail:1013412413@qq.com

通讯作者:

顾泽茂, E-mail:guzemao@mail.hzau.edu.cn

中图分类号:

S917.4

基金项目:

湖北省技术创新计划项目(2025BBA005);湖北省第四批现代农业产业技术体系水产产业技术体系项目(2025HBSTX4-05);湖北省农业科技创新中心项目(2025-621-000-001-029);湖北省科技创新人才计划项目(2025DJB021);湖北省支持种业高质量发展资金项目(HBZY2023B009)


Genome-wide identification and stress response of Rho gene family in Procambarus clarkii
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1Aquatic Animal Disease Prevention and Control & Green Breeding Laboratory/ Shuangshui Shuanglü Institute/College of Fisheries,Huazhong Agricultural University, Wuhan 430070,China;2Hubei Hongshan Laboratory,Wuhan 430070,China

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    摘要:

    为解析克氏原螯虾(Procambarus clarkii)Rho基因家族的特征及生物学功能,从全基因组水平鉴定克氏原螯虾Rho基因家族,采用实时荧光定量PCR(qRT-PCR)技术分析Rho基因家族成员在克氏原螯虾不同组织中的表达情况,并利用多个转录组数据分析Rho基因家族成员分别在病毒、低温和低氧胁迫条件下的响应特征。结果显示,从克氏原螯虾基因组中鉴定出PcRhoA、PcCdc42、PcRac、PcRhoBTB 4个Rho基因家族成员,分别属于Rho、Cdc42、Rac和RhoBTB 4个亚家族。Rho基因家族成员在成虾肌肉、肝胰腺、鳃、胃、触角腺、表皮、眼柄、心脏和肠道中呈现不同的表达模式,其中PcRhoA和PcCdc42在心脏和肠道中均高表达,PcRac在表皮中高表达,PcRhoBTB在鳃组织中高表达。白斑综合征病毒(white spot syndrome virus, WSSV)攻毒7 d后,PcRhoA和PcRhoBTB在肝胰腺中分别呈极显著上调表达和显著上调表达;低温(水温为1 ℃)处理31 d后,PcRhoA、PcCdc42和PcRhoBTB在肌肉中均呈显著下调表达;低氧[DO(2.5±0.2) mg/L]处理3 h后,PcRac和PcRhoBTB在肝胰腺中均呈显著下调表达。结果表明,PcRhoA和PcRhoBTB对生物和非生物应激胁迫均表现出显著响应,表明二者可能具有潜在的综合抗应激功能。

    Abstract:

    To elucidate the characteristics and biological functions of the Rho gene family in Procambarus clarkii,members of this gene family were identified at the genome-wide level.Quantitative real-time PCR (qRT-PCR) was employed to analyze the expression profiles of these genes across various tissues,and multiple transcriptomic datasets were utilized to investigate their responses to viral infection,low-temperature stress,and hypoxic stress.A total of 4 Rho gene family members (PcRhoA,PcCdc42,PcRac,and PcRhoBTB) were identified from the P.clarkii genome,corresponding to the Rho,Cdc42,Rac,and RhoBTB subfamilies,respectively.These Rho family members exhibited distinct tissue-specific expression patterns in the muscle,hepatopancreas,gill,stomach,antennal gland,epidermis,eyestalk,heart,and intestine.Among them,PcRhoA and PcCdc42 were highly expressed in both the heart and intestine,PcRac displayed high expression in the epidermis,while PcRhoBTB was predominantly expressed in the gill.Following a 7-day challenge with white spot syndrome virus (WSSV),the expression levels of PcRhoA and PcRhoBTB in the hepatopancreas were significantly up-regulated,with PcRhoA showing an extremely significant increase.After 31 days of low-temperature treatment (1 ℃),the expression levels of PcRhoA,PcCdc42,and PcRhoBTB in muscle tissue were significantly downregulated.Under hypoxic conditions [dissolved oxygen (DO) = (2.5±0.2) mg/L] for 3 hours,PcRac and PcRhoBTB were significantly downregulated in the hepatopancreas.Stress-response analyses demonstrated that PcRhoA and PcRhoBTB responded significantly to both biotic and abiotic stressors,suggesting their potential involvement in comprehensive anti-stress mechanisms.

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杨成伟,索美涛,黑春雨,王江华,顾泽茂.克氏原螯虾Rho基因家族的全基因组鉴定及表达分析[J].华中农业大学学报,2026,45(4):232-240

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  • 收稿日期:2025-09-14
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  • 在线发布日期: 2026-08-11
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