青贮玉米品质相关性状的全基因组关联分析
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作者单位:

1.贵州省农业科学院旱粮研究所,贵阳 550006;2.贵州大学农学院,贵阳 550025;3.农业农村部喀斯特山区作物基因资源与种质创新重点实验室,贵阳 550006

作者简介:

刘鹏飞,E-mail:350043232@qq.com

通讯作者:

陈泽辉,E-mail:chenzh907@sina.com

中图分类号:

S513.3

基金项目:

国家自然科学基金项目(32171981;32060460;32160451);贵州省自然科学基金项目(黔科合基础[2022]一般236);贵州科技计划项目(黔科合基础-ZK[2023]一般173);贵州省科技支撑计划(黔科合支撑[2022]重点029);贵州省重大科技成果转化项目(黔科合成果[2024]重大009)


Genome-wide association analysis of quality related traits in silage maize
Author:
Affiliation:

1.Institute of Upland Food Crops, Guizhou Academy of Agricultural Sciences, Guiyang 550006, China;2.College of Agriculture, Guizhou University, Guiyang 550025, China;3.Ministry of Agriculture and Rural Affairs Key Laboratory of Crop Genetic Resources and Germplasm Innovation in Karst Region, Guiyang 550006, China

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    摘要:

    为了初步揭示玉米粗蛋白含量、淀粉含量、中性洗涤纤维(neutral detergent fiber, NDF)含量、酸性洗涤纤维(acid detergent fiber,ADF)含量、可溶性糖含量和体外干物质消化率等性状的遗传规律,按照随机区组设计将183份自交系为材料种植于贵阳,测定玉米粗蛋白含量、淀粉含量、NDF含量、ADF含量、可溶性糖含量和体外干物质消化率,利用Maize SNP 50芯片对供试材料进行基因分型,采用混合线性模型进行全基因组关联分析,结果显示,分别鉴定出31、61、11、36、20和42个与粗蛋白、淀粉、NDF、ADF、可溶性糖及体外干物质消化率显著相关的单核苷酸多态性位点(SNP)(P<0.001),对表型变异的解释率分别为5.80%~11.40%、5.78%~11.38%、5.78%~7.85%、5.81%~10.37%、5.78%~7.35%和5.79%~11.33%。同时,发现SYN6712、PHM1190.3、SYN7541和PZE-104072386属于一因多效位点;其中,6号染色体上的SYN6712、PHM1190.3和SYN7541同时与淀粉、体外干物质消化率显著关联,4号染色体上的PZE-104072386同时与ADF、可溶性糖显著关联,经过等位变异鉴定发现T/T基因型是SYN6712和PHM1190.3的优异等位变异,并挖掘到了Zm00001d037272Zm00001d037386Zm00001d037532Zm00001d051166等候选基因。

    Abstract:

    183 maize inbred lines were planted in Guiyang according to a random block design to preliminarily study the genetic patterns of the content of crude protein, starch, neutral detergent fiber (NDF), acid detergent fiber (ADF), soluble sugar, and the in vitro digestibility of dry matter in maize. The content of crude protein, starch, NDF, ADF, soluble sugars, and the in vitro digestibility of dry matter in maize was determined. The Maize SNP 50 chip was used to genotype materials tested. Genome-wide association analysis (GWAS) with the mixed linear model (MLM) was performed. The results showed that 31, 61, 11, 36, 20, and 42 single nucleotide polymorphisms (SNPs) sites were identified to be significantly associated with the content of crude protein, starch, NDF, ADF, soluble sugars, and the in vitro digestibility of dry matter in maize (P<0.001), with the explanation rates for phenotypic variation of 5.80%-11.40%,5.78%-11.38%,5.78%-7.85%,5.81%-10.37%,5.78%-7.35%,and 5.79%-11.33%, respectively. It was found that SYN6712, PHM1190.3, SYN7541, and PZE-104072386 belong to a pleiotropic locus. Among them, SYN6712, PHM1190.3, and SYN7541 on the chromosome 6 were significantly associated with the content of starch and the in vitro digestibility of dry matter, while PZE-104072386 on the chromosome 4 was significantly associated with the content of ADF and soluble sugars. The results of allele identification showed that the T/T genotype was an elite allele of SYN6712 and PHM1190.3, and candidate genes including Zm00001d03772Zm00001d037386Zm00001d037532, and Zm00001d051166 were identified. It will provide theoretical support for the further studies on the genetic mechanism of quality related traits in maize including the content of crude protein, starch, NDF, ADF and soluble sugars, as well as for the molecular markers assisted breeding.

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刘鹏飞,王栋,陈泽辉,郭向阳,吴迅,王安贵,涂亮,祝云芳.青贮玉米品质相关性状的全基因组关联分析[J].华中农业大学学报,2024,43(5):65-74

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  • 收稿日期:2023-11-04
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  • 在线发布日期: 2024-10-08
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