On the premise of controlling the total amount of establishment resources, how to revitalise the stock of establishment resources, enhance the efficiency of establishment resources utilization, and achieve integrated deployment and dynamic adjustment of establishment resources through internal allocation, is an important direction of the current institutional establishment management reform. Field research has revealed that S county in Zhejiang has introduced an innovative and systematic reform path of establishment management, which is “mapping the bottom figure-performance evaluation-overall planning and optimization.” It has been able to solve the multiple dilemmas such as the diversification of the establishment management departments, the fragmentation of the management process, and the privatization of the establishment interests, and realize the establishment resources holistic deployment through the establishment management department coordination, closed-loop process as well as the holistic optimization. Compared with the fragmentation of the government caused by the traditional bureaucratic system based on the division of responsibilities, this holistic allocation reconstructs a new governance scenario, which is problem-oriented and centered on governance tasks. It is an effective exploration to solve the fragmentation of government that the whole governance requirements such as coordination, integration and responsibility can be realized in the internal scene.