This paper illustrates the practical significance of cooperative running schools by agricultural universities and enterprises in the new era.Based on the practice in Huazhong Agricultural University,this paper concluded that the universities and enterprises should establish a winwin relationship so that the enterprises will become the bases of student’s employment,bases of technological product periodical test and bases of technological model,and enterprises will regard universities as bases of personnel training,technology foundation and bases for research and development.This paper finally makes some suggestions on how to run schools by agricultural universities and enterprises in the new era.